Difference between revisions of "Software Acknowledgements"

From GeneSetEnrichmentAnalysisWiki
Jump to navigation Jump to search
 
(19 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
<div>
+
[http://www.broadinstitute.org/gsea/ GSEA Home] |
−
<p><a href="http://www.broad.mit.edu/gsea/">GSEA Home</a> |  <a href="../../software/software_index.html">Software</a> | <a href="http://www.broad.mit.edu/gsea/msigdb/">MSigDB</a> | [[Main_Page|Documentation]] | <a href="../../resources/resources_index.html">Resources</a></p>
+
[http://www.broadinstitute.org/gsea/downloads.jsp Downloads] |
−
<p><font size="3">GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.</font></p>
+
[http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] |
−
</div>
+
[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |
−
<p> </p>
+
[http://www.broadinstitute.org/gsea/contact.jsp Contact]
−
<table cellpadding="0" border="0" style="" class="MsoNormalTable">
+
<br>
−
    <tbody>
+
 
−
        <tr style="height: 73.5pt;">
+
<p>
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 73.5pt;">
+
The GSEA Desktop v3.0 and greater is distributed, in part, under and subject to the provisions of licenses for [https://raw.githubusercontent.com/GSEA-MSigDB/gsea-desktop/master/LICENSE-3RD-PARTY.txt a number of third-party libraries and components] used in its development.  
−
            <p><font size="3">Jide Software</font></p>
+
</p>
−
            </td>
+
<p>
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 73.5pt;">
+
The MSigDB XML Browser v1.0 Beta is distributed, in part, under and subject to the provisions of licenses for  
−
            <p><font size="3">Java/Swing components</font></p>
+
[https://raw.githubusercontent.com/GSEA-MSigDB/msigdb-xml-browser/master/LICENSE-3RD-PARTY.txt a number of third-party libraries and components] used in its development.
−
            </td>
+
</p>
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 73.5pt;">
+
<p>
−
            <p><font size="3">[http://www.jidesoft.com </font><font size="3">jidesoft.com</font><font size="3">]</font></p>
+
GSEA gratefully acknowledges the
−
            </td>
+
[http://www.broadinstitute.org/gsea/msigdb/download_file.jsp?filePath=/resources/software/gsea2.x-3RD-PARTY-ACKNOWLEDGMENTS.txt listed components] used in the development of the v2.x code.
−
        </tr>
+
</p>
−
        <tr style="height: 73.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 73.5pt;">
 
−
            <p><font size="3">The Java 2 Platform </font></p>
 
−
            <p><font size="3">[[image:duke.gif]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 73.5pt;">
 
−
            <p><font size="3">Language that the GSEA desktop application is written in</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 73.5pt;">
 
−
            <p><font size="3">[http://java.sun.com/ </font><font size="3">java.sun.com</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 84pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 84pt;">
 
−
            <p><font size="3"><span class="body">The R programming language</span></font> </p>
 
−
            <p><font size="3">[[image:Rlogo.jpg]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 84pt;">
 
−
            <p><font size="3">Language that the GSEAP-P-R is written in</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 84pt;">
 
−
            <p><font size="3">[http://www.r-project.org/index.html </font><font size="3">www.r-project.org</font><font size="3">]</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 64.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
−
            <p><font size="3">&nbsp;Intellij IDEA</font></p>
 
−
            <p><font size="3">[[image:idea.png]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
−
            <p><font size="3">An awesome integrated development environment for Java</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
−
            <p><font size="3">[http://www.intellij.com/idea/ </font><font size="3">www.intellij.com/idea</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 24pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 24pt;">
 
−
            <p><font size="3">JGoodies</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 24pt;">
 
−
            <p><font size="3">Forms layout and java look and feel</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 24pt;">
 
−
            <p><font size="3">[http://www.jgoodies.com/ </font><font size="3">www.jgoodies.com</font><font size="3">]</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 64.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
−
            <p><font size="3">foxtrot</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
−
            <p><font size="3">Java event handling mechanism for GUI's.</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
−
            <p><font size="3">&nbsp;[http://foxtrot.sourceforge.net/docs/introduction.php </font><font size="3">foxtrot.sourceforge.net</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 64.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
−
            <p><font size="3">dom4j</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
−
            <p><font size="3">XML Parser</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
−
            <p><font size="3">[http://www.dom4j.org/ </font><font size="3">www.dom4j.org</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 64.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
−
            <p><font size="3">itext </font></p>
 
−
            <p><font size="3">[[image:itext.gif]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
−
            <p><font size="3">Java PDF library</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
−
            <p><font size="3">[http://www.lowagie.com/iText/ </font><font size="3">www.lowagie.com/iText</font><font size="3">]</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 96.75pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 96.75pt;">
 
−
            <p><font size="3">Jakarta POI</font></p>
 
−
            <p><font size="3"> (especially HSSF)</font></p>
 
−
            <p><font size="3">[[image: poi-logo.png]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 96.75pt;">
 
−
            <p><font size="3">Java excel reporting</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 96.75pt;">
 
−
            <p><font size="3">[http://jakarta.apache.org/poi/hssf/index.html </font><font size="3">jakarta.apache.org/poi</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 123pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 123pt;">
 
−
            <p><font size="3">JFreeChart </font></p>
 
−
            <p><font size="3">[[image: jfreechart.png]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 123pt;">
 
−
            <p><font size="3">Graphing library for Java</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 123pt;">
 
−
            <p><font size="3">[http://www.object-refinery.com/jfreechart/ </font><font size="3">www.object-refinery.com/jfreechart</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 82.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 82.5pt;">
 
−
            <p><font size="3">JUnit </font></p>
 
−
            <p><font size="3">[[image: junit.gif]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 82.5pt;">
 
−
            <p><font size="3">Unit testing API</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 82.5pt;">
 
−
            <p><font size="3">[http://www.junit.org/index.htm </font><font size="3">www.junit.org</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 130.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 130.5pt;">
 
−
            <p><font size="3">log4j </font></p>
 
−
            <p><font size="3">[[image:log4j.jpg]]</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 130.5pt;">
 
−
            <p><font size="3">Logging toolkit for Java</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 130.5pt;">
 
−
            <p><font size="3">[http://jakarta.apache.org/log4j/docs/ </font><font size="3">jakarta.apache.org/log4j</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 38.25pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 38.25pt;">
 
−
            <p><font size="3">Oro</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 38.25pt;">
 
−
            <p><font size="3">Regular expressions library in Java</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 38.25pt;">
 
−
            <p><font size="3">[http://jakarta.apache.org/oro/ </font><font size="3">jakarta.apache.org/oro</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 64.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 64.5pt;">
 
−
            <p><font size="3">Trove</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 64.5pt;">
 
−
            <p><font size="3">High performance collections library from GNU</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 64.5pt;">
 
−
            <p><font size="3">[http://trove4j.sourceforge.net/ </font><font size="3">trove4j.sourceforge.net</font><font size="3">]&nbsp;</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 49.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 49.5pt;">
 
−
            <p><font size="3">ECS</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 49.5pt;">
 
−
            <p><font size="3">Element construction set (a HTML tag library from Apache&nbsp; <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 49.5pt;">
 
−
            <p><font size="3">[http://jakarta.apache.org/ecs/ </font><font size="3">jakarta.apache.org</font><font size="3">]</font></p>
 
−
            </td>
 
−
        </tr>
 
−
        <tr style="height: 49.5pt;">
 
−
            <td width="28%" style="padding: 0.75pt; width: 28%; height: 49.5pt;">
 
−
            <p><font size="3">Xenu link sleuth</font></p>
 
−
            </td>
 
−
            <td width="34%" style="padding: 0.75pt; width: 34%; height: 49.5pt;">
 
−
            <p><font size="3">Website broken link checker</font></p>
 
−
            </td>
 
−
            <td width="40%" style="padding: 0.75pt; width: 40%; height: 49.5pt;">
 
−
            <p><font size="3">[http://home.snafu.de/tilman/xenulink.html </font><font size="3">home.snafu.de/tilman/xenulink</font><font size="3">]</font></p>
 
−
            </td>
 
−
        </tr>
 
−
    </tbody>
 
−
</table>
 

Latest revision as of 01:51, 22 August 2019

GSEA Home | Downloads | Molecular Signatures Database | Documentation | Contact

The GSEA Desktop v3.0 and greater is distributed, in part, under and subject to the provisions of licenses for a number of third-party libraries and components used in its development.

The MSigDB XML Browser v1.0 Beta is distributed, in part, under and subject to the provisions of licenses for a number of third-party libraries and components used in its development.

GSEA gratefully acknowledges the listed components used in the development of the v2.x code.

Retrieved from "https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Software_Acknowledgements&oldid=4329"