Software Acknowledgements
From GeneSetEnrichmentAnalysisWiki
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<tr style="height: 73.5pt;"> | <tr style="height: 73.5pt;"> | ||
| - | <td> | + | <td>[http://www.jidesoft.com Jide Software]</td> |
<td>Java/Swing components</td> | <td>Java/Swing components</td> | ||
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://www.oracle.com/technetwork/java/index.html The Java 2 Platform]</td> |
<td>Language that the GSEA desktop application is written in</td> | <td>Language that the GSEA desktop application is written in</td> | ||
<td>[[image:duke.gif]]</td> | <td>[[image:duke.gif]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://www.r-project.org/index.html The R programming language]</td> |
<td>Language that the GSEAP-P-R is written in</td> | <td>Language that the GSEAP-P-R is written in</td> | ||
<td>[[image:Rlogo.jpg]]</td> | <td>[[image:Rlogo.jpg]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://www.intellij.com/idea/ Intellij IDEA]</td> |
<td>An awesome integrated development environment for Java</td> | <td>An awesome integrated development environment for Java</td> | ||
<td>[[image:idea.png]]</td> | <td>[[image:idea.png]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://www.jgoodies.com/ JGoodies]</td> |
<td>Forms layout and java look and feel</td> | <td>Forms layout and java look and feel</td> | ||
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://foxtrot.sourceforge.net/docs/introduction.php foxtrot]</td> |
<td>Java event handling mechanism for GUI's.</td> | <td>Java event handling mechanism for GUI's.</td> | ||
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://www.dom4j.org/ dom4j]</td> |
<td>XML Parser</td> | <td>XML Parser</td> | ||
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://www.lowagie.com/iText/ itext]</td> |
<td>Java PDF library</td> | <td>Java PDF library</td> | ||
<td>[[image:itext.gif]]</td> | <td>[[image:itext.gif]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://jakarta.apache.org/poi/hssf/index.html Jakarta POI (especially HSSF)]</td> |
<td>Java excel reporting</td> | <td>Java excel reporting</td> | ||
<td>[[image: poi-logo.png]]</td> | <td>[[image: poi-logo.png]]</td> | ||
</tr> | </tr> | ||
<tr style="height: 123pt;"> | <tr style="height: 123pt;"> | ||
| - | <td> | + | <td>[http://www.object-refinery.com/jfreechart/ JFreeChart]</td> |
<td>Graphing library for Java</td> | <td>Graphing library for Java</td> | ||
<td>[[image: jfreechart.png]]</td> | <td>[[image: jfreechart.png]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://www.junit.org/index.htm JUnit]</td> |
<td>Unit testing API</td> | <td>Unit testing API</td> | ||
<td>[[image: junit.gif]]</td> | <td>[[image: junit.gif]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://jakarta.apache.org/log4j/docs/ log4j]</td> |
<td>Logging toolkit for Java</td> | <td>Logging toolkit for Java</td> | ||
<td>[[image:log4j.jpg]]</td> | <td>[[image:log4j.jpg]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://jakarta.apache.org/oro/ Oro]</td> |
<td>Regular expressions library in Java</td> | <td>Regular expressions library in Java</td> | ||
<td>[[Image:Oro.logo.gif]]</td> | <td>[[Image:Oro.logo.gif]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://trove4j.sourceforge.net Trove]</td> |
<td>High performance collections library from GNU</td> | <td>High performance collections library from GNU</td> | ||
<td></td> | <td></td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://jakarta.apache.org/ecs ECS]</td> |
<td>Element construction set (a HTML tag library from Apache Jakarta</td> | <td>Element construction set (a HTML tag library from Apache Jakarta</td> | ||
<td>[[Image:Ecs-small.jpg]]</td> | <td>[[Image:Ecs-small.jpg]]</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| - | <td> | + | <td>[http://home.snafu.de/tilman/xenulink.html Xenu link sleuth]</td> |
<td>Website broken link checker</td> | <td>Website broken link checker</td> | ||
<td>[[Image:Xenu_logo.png]]</td> | <td>[[Image:Xenu_logo.png]]</td> | ||
Revision as of 07:29, 25 September 2016
GSEA Home |
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Contact
GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.
| Jide Software | Java/Swing components | |
| The Java 2 Platform | Language that the GSEA desktop application is written in |  |
| The R programming language | Language that the GSEAP-P-R is written in |  |
| Intellij IDEA | An awesome integrated development environment for Java |  |
| JGoodies | Forms layout and java look and feel | |
| foxtrot | Java event handling mechanism for GUI's. | |
| dom4j | XML Parser | |
| itext | Java PDF library |  |
| Jakarta POI (especially HSSF) | Java excel reporting |  |
| JFreeChart | Graphing library for Java |  |
| JUnit | Unit testing API |  |
| log4j | Logging toolkit for Java |  |
| Oro | Regular expressions library in Java |  |
| Trove | High performance collections library from GNU | |
| ECS | Element construction set (a HTML tag library from Apache Jakarta |  |
| Xenu link sleuth | Website broken link checker |  |
