Software Acknowledgements

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GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.

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Jide Software	Java/Swing components	jidesoft.com
The Java 2 Platform	Language that the GSEA desktop application is written in	java.sun.com
The R programming language	Language that the GSEAP-P-R is written in	www.r-project.org
Intellij IDEA	An awesome integrated development environment for Java	www.intellij.com/idea
JGoodies	Forms layout and java look and feel	www.jgoodies.com
foxtrot	Java event handling mechanism for GUI's.	foxtrot.sourceforge.net
dom4j	XML Parser	www.dom4j.org
itext	Java PDF library	www.lowagie.com/iText
Jakarta POI (especially HSSF)	Java excel reporting	jakarta.apache.org/poi
JFreeChart	Graphing library for Java	www.object-refinery.com/jfreechart
JUnit	Unit testing API	www.junit.org
log4j	Logging toolkit for Java	jakarta.apache.org/log4j
Oro	Regular expressions library in Java	jakarta.apache.org/oro
Trove	High performance collections library from GNU	trove4j.sourceforge.net
ECS	Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)	jakarta.apache.org
Xenu link sleuth	Website broken link checker	home.snafu.de/tilman/xenulink