Software Acknowledgements
<a href="http://www.broadinstitute.org/gsea/">GSEA Home</a> |
<a href="http://www.broadinstitute.org/gsea/downloads.jsp">Downloads</a> |
<a href="http://www.broadinstitute.org/gsea/msigdb/">Molecular Signatures Database</a> |
<a href="http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page">Documentation</a> |
<a href="http://www.broadinstitute.org/gsea/contact.jsp">Contact</a>
GSEA implementations use many software tools and libraries, several of which are open source or freely available. Our thanks to their developers.
<tbody> </tbody>| <a href="http://www.jidesoft.com">Jide Software</a> | Java/Swing components | |
| <a href="http://www.oracle.com/technetwork/java/index.html">The Java 2 Platform | Language that the GSEA desktop application is written in |  |
| <a href="http://www.r-project.org/index.html">The R programming language</a> | Language that the GSEAP-P-R is written in |  |
| <a href="http://www.intellij.com/idea/">Intellij IDEA</a> | An awesome integrated development environment for Java |  |
| <a href="http://www.jgoodies.com/">JGoodies</a> | Forms layout and java look and feel | |
| <a href="http://foxtrot.sourceforge.net/docs/introduction.php">foxtrot</a> | Java event handling mechanism for GUI's. | |
| <a href="http://www.dom4j.org/">dom4j</a> | XML Parser | |
| <a href="http://www.lowagie.com/iText/">itext</a> | Java PDF library |  |
| <a href="http://jakarta.apache.org/poi/hssf/index.html">Jakarta POI (especially HSSF)</a> | Java excel reporting |  |
| <a href="http://www.object-refinery.com/jfreechart/">JFreeChart</a> | Graphing library for Java |  |
| <a href="http://www.junit.org/index.htm">JUnit</a> | Unit testing API |  |
| <a href="http://jakarta.apache.org/log4j/docs/">log4j</a> | Logging toolkit for Java |  |
| <a href="http://jakarta.apache.org/oro/">Oro</a> | Regular expressions library in Java |  |
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Trove |
High performance collections library from GNU |
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ECS |
Element construction set (a HTML tag library from Apache <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>) |
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Xenu link sleuth |
Website broken link checker |
