Software Acknowledgements

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GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.

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Jide Software

Java/Swing components

[1]

The Java 2 Platform

image:duke.gif

Language that the GSEA desktop application is written in

[2] 

The R programming language

image:Rlogo.jpg

Language that the GSEAP-P-R is written in

[3]

 Intellij IDEA

image:idea.png

An awesome integrated development environment for Java

[4] 

JGoodies

Forms layout and java look and feel

[5]

foxtrot

Java event handling mechanism for GUI's.

 [6] 

dom4j

XML Parser

[7] 

itext

[image:itext.gif]

Java PDF library

[8]

<st1:place w:st="on"><st1:city w:st="on">jakarta</st1:city></st1:place> POI (especially HSSF)

image: poi-logo.png

Java excel reporting

[9] 

JFreeChart

image: jfreechart.png

Graphing library for Java

[10] 

JUnit

image: junit.gif

Unit testing API

[11] 

log4j

[[image:log4j.jpg]

Logging toolkit for Java

[12] 

Oro

Regular expressions library in Java

[13] 

Trove

High performance collections library from GNU

[14] 

ECS

Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)

[15]

Xenu link sleuth

Website broken link checker

[16]

InstallAnywhere

Java installation program builder

[17]

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Personal tools