Software Acknowledgements

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GSEA implementations use many software tools and libraries, several of which are open source and/or freely available. Our thanks to their developers.

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Jide Software

Java/Swing components

www.jidesoft.com

The Java 2 Platform

image:duke.gif

Language that the GSEA desktop application is written in

java.sun.com/ 

The R programming language

image:Rlogo.jpg

Language that the GSEAP-P-R is written in

www.r-project.org/index.html

 Intellij IDEA

image:idea.png

An awesome integrated development environment for Java

[1] 

JGoodies

Forms layout and java look and feel

[2]

foxtrot

Java event handling mechanism for GUI's.

 [3] 

dom4j

XML Parser

[4] 

itext

image:itext.gif

Java PDF library

[5]

<st1:place w:st="on"><st1:city w:st="on">jakarta</st1:city></st1:place> POI (especially HSSF)

image: poi-logo.png

Java excel reporting

[6] 

JFreeChart

image: jfreechart.png

Graphing library for Java

[7] 

JUnit

image: junit.gif

Unit testing API

[8] 

log4j

image:log4j.jpg

Logging toolkit for Java

[9] 

Oro

Regular expressions library in Java

[10] 

Trove

High performance collections library from GNU

[11] 

ECS

Element construction set (a HTML tag library from Apache  <st1:place w:st="on"><st1:city w:st="on">Jakarta</st1:city></st1:place>)

[12]

Xenu link sleuth

Website broken link checker

[13]

InstallAnywhere

Java installation program builder

[14]

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Personal tools