Difference between revisions of "Web site v6.4 Release Notes"
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[http://www.broadinstitute.org/gsea/contact.jsp Contact] <br /> | [http://www.broadinstitute.org/gsea/contact.jsp Contact] <br /> | ||
<br /> | <br /> | ||
| − | Release 6.4 of the GSEA | + | Release 6.4 of the GSEA/MSigDB web site : |
<ul> | <ul> | ||
| − | <li>Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0. | + | <li>Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.x_Release_Notes GSEA 4.0.x], including updated Downloads page, gene set pages, and documentation.</li> |
| − | |||
| − | |||
<li>Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority. Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL. | <li>Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority. Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL. | ||
</li> | </li> | ||
| − | <li> | + | <li>The tools on the [http://software.broadinstitute.org/gsea/msigdb/annotate.jsp Investigate Gene Sets page] now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted. This change is required for greater accuracy in the conversion process. </li> |
| + | <li>Added a new page [http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp Supplementary Gene Sets] with a collection of gene sets representing single cell identities ('''SCSig''').</li> | ||
| + | </ul> | ||
| + | |||
| + | <br /><br /> | ||
| + | Known Issues: | ||
| + | <ul> | ||
| + | <li>The GenomeSpace integration is not working at this time.</li> | ||
</ul> | </ul> | ||
Latest revision as of 13:54, 16 October 2019
GSEA Home |
Downloads |
Molecular Signatures Database |
Documentation |
Contact
Release 6.4 of the GSEA/MSigDB web site :
- Updated for MSigDB 7.0 and GSEA 4.0.x, including updated Downloads page, gene set pages, and documentation.
- Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority. Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.
- The tools on the Investigate Gene Sets page now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted. This change is required for greater accuracy in the conversion process.
- Added a new page Supplementary Gene Sets with a collection of gene sets representing single cell identities (SCSig).
Known Issues:
- The GenomeSpace integration is not working at this time.
