Web site v6.4 Release Notes - Revision history https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&action=history Revision history for this page on the wiki en MediaWiki 1.34.4 Fri, 29 Mar 2024 13:36:06 GMT Acastanza at 17:54, 16 October 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4356&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4356&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 17:54, 16 October 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA/MSigDB web site :</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA/MSigDB web site :</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.<del class="diffchange diffchange-inline">0_Release_Notes </del>GSEA 4.0.<del class="diffchange diffchange-inline">0</del>], including updated Downloads page, gene set pages, and documentation.&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.<ins class="diffchange diffchange-inline">x_Release_Notes </ins>GSEA 4.0.<ins class="diffchange diffchange-inline">x</ins>], including updated Downloads page, gene set pages, and documentation.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td></tr> </table> Wed, 16 Oct 2019 17:54:27 GMT Acastanza https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Eby at 05:52, 21 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4328&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4328&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 05:52, 21 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l12" >Line 12:</td> <td colspan="2" class="diff-lineno">Line 12:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;The tools on the  [http://software.broadinstitute.org/gsea/msigdb/annotate.jsp Investigate Gene Sets page] now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  &lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;The tools on the  [http://software.broadinstitute.org/gsea/msigdb/annotate.jsp Investigate Gene Sets page] now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  &lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   &lt;li&gt;Added a new page [http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp Supplementary Gene Sets] with a collection of gene sets representing single cell identities ('''SCSig''').&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>   &lt;li&gt;Added a new page [http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp Supplementary Gene Sets] with a collection of gene sets representing single cell identities ('''SCSig''').&lt;/li&gt;</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;/ul&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;br /&gt;&lt;br /&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Known Issues:</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;ul&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">  &lt;li&gt;The GenomeSpace integration is not working at this time.&lt;/li&gt;</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> </table> Wed, 21 Aug 2019 05:52:25 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Helga at 18:52, 13 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4314&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4314&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:52, 13 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l11" >Line 11:</td> <td colspan="2" class="diff-lineno">Line 11:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;The tools on the  [http://software.broadinstitute.org/gsea/msigdb/annotate.jsp Investigate Gene Sets page] now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  &lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;The tools on the  [http://software.broadinstitute.org/gsea/msigdb/annotate.jsp Investigate Gene Sets page] now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  &lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>   &lt;li&gt;Added <del class="diffchange diffchange-inline">the </del>[http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp Supplementary Gene Sets <del class="diffchange diffchange-inline">page</del>] with <del class="diffchange diffchange-inline">contents for </del>a collection of gene sets representing single cell identities (SCSig).&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>   &lt;li&gt;Added <ins class="diffchange diffchange-inline">a new page </ins>[http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp Supplementary Gene Sets] with a collection of gene sets representing single cell identities (<ins class="diffchange diffchange-inline">'''</ins>SCSig<ins class="diffchange diffchange-inline">'''</ins>).&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> </table> Tue, 13 Aug 2019 18:52:47 GMT Helga https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Helga at 18:49, 13 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4313&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4313&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:49, 13 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA/MSigDB web site :</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA/MSigDB web site :</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes GSEA 4.0.0]<del class="diffchange diffchange-inline">. &lt;/li&gt;</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes GSEA 4.0.0]<ins class="diffchange diffchange-inline">, including updated Downloads </ins>page<ins class="diffchange diffchange-inline">, gene </ins>set <ins class="diffchange diffchange-inline">pages</ins>, and <ins class="diffchange diffchange-inline">documentation</ins>.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">    &lt;li&gt;The tools on the Investigate Gene Set </del>page <del class="diffchange diffchange-inline">now use a more constrained </del>set <del class="diffchange diffchange-inline">of namespaces for the symbol conversion process</del>, and <del class="diffchange diffchange-inline">require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</del></div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp Help with Investigating Gene Sets] page for more details</del>.&lt;/li&gt;</div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;Added the Supplementary Gene Sets page with contents for <del class="diffchange diffchange-inline">the </del>SCSig <del class="diffchange diffchange-inline">Single Cell Identities collection</del>.&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&lt;li&gt;The tools on the  [http://software.broadinstitute.org/gsea/msigdb/annotate.jsp Investigate Gene Sets page] now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  &lt;/li&gt;</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">  </ins>&lt;li&gt;Added the <ins class="diffchange diffchange-inline">[http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp </ins>Supplementary Gene Sets page<ins class="diffchange diffchange-inline">] </ins>with contents for <ins class="diffchange diffchange-inline">a collection of gene sets representing single cell identities (</ins>SCSig<ins class="diffchange diffchange-inline">)</ins>.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> </table> Tue, 13 Aug 2019 18:49:29 GMT Helga https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Helga at 18:29, 13 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4312&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4312&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:29, 13 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA/MSigDB web site :</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA/MSigDB web site :</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes GSEA 4.0.0]<del class="diffchange diffchange-inline">.  Streamlined the Downloads page</del>.&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes GSEA 4.0.0]. &lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td></tr> </table> Tue, 13 Aug 2019 18:29:37 GMT Helga https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Helga at 18:27, 13 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4311&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4311&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:27, 13 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l5" >Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://www.broadinstitute.org/gsea/contact.jsp Contact]  &lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://www.broadinstitute.org/gsea/contact.jsp Contact]  &lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;br /&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA <del class="diffchange diffchange-inline">public Web </del>site :</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA<ins class="diffchange diffchange-inline">/MSigDB web </ins>site :</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes GSEA 4.0.0].  Streamlined the Downloads page.&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes GSEA 4.0.0].  Streamlined the Downloads page.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page <del class="diffchange diffchange-inline">will </del>now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td></tr> </table> Tue, 13 Aug 2019 18:27:26 GMT Helga https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Acastanza at 15:28, 13 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4302&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4302&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:28, 13 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA public Web site :</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA public Web site :</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes<del class="diffchange diffchange-inline">| </del>MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes<del class="diffchange diffchange-inline">| </del>GSEA 4.0.0].  Streamlined the Downloads page.&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes GSEA 4.0.0].  Streamlined the Downloads page.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page will now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page will now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp<del class="diffchange diffchange-inline">| </del>Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority.  Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;Added the Supplementary Gene Sets page with contents for the SCSig Single Cell Identities collection.&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;Added the Supplementary Gene Sets page with contents for the SCSig Single Cell Identities collection.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ul&gt;</div></td></tr> </table> Tue, 13 Aug 2019 15:28:26 GMT Acastanza https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Eby at 18:44, 12 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4297&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4297&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:44, 12 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA public Web site :</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA public Web site :</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes | MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes<del class="diffchange diffchange-inline">]</del>GSEA 4.0.0].  Streamlined the Downloads page.&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes| MSigDB 7.0] and [https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.0_Release_Notes<ins class="diffchange diffchange-inline">| </ins>GSEA 4.0.0].  Streamlined the Downloads page.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page will now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page will now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp| Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp| Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td></tr> </table> Mon, 12 Aug 2019 18:44:55 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Eby at 18:44, 12 August 2019 https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4296&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4296&oldid=prev <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 18:44, 12 August 2019</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l7" >Line 7:</td> <td colspan="2" class="diff-lineno">Line 7:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA public Web site :</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Release 6.4 of the GSEA public Web site :</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ul&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for <del class="diffchange diffchange-inline">&lt;a href=&quot;</del>https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes<del class="diffchange diffchange-inline">&quot;&gt;</del>MSigDB 7.0<del class="diffchange diffchange-inline">&lt;/a&gt; </del>and <del class="diffchange diffchange-inline">&lt;a href=&quot;</del>https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4..0_Release_Notes<del class="diffchange diffchange-inline">&quot;&gt;</del>GSEA 4.0.0<del class="diffchange diffchange-inline">&lt;/a&gt;</del>.  Streamlined the Downloads page.&lt;/li&gt;</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;Updated for <ins class="diffchange diffchange-inline">[</ins>https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes <ins class="diffchange diffchange-inline">| </ins>MSigDB 7.0<ins class="diffchange diffchange-inline">] </ins>and <ins class="diffchange diffchange-inline">[</ins>https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.<ins class="diffchange diffchange-inline">0</ins>.0_Release_Notes<ins class="diffchange diffchange-inline">]</ins>GSEA 4.0.0<ins class="diffchange diffchange-inline">]</ins>.  Streamlined the Downloads page.&lt;/li&gt;</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page will now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     &lt;li&gt;The tools on the Investigate Gene Set page will now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted.  This change is required for greater accuracy in the conversion process.  See</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp| Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp| Help with Investigating Gene Sets] page for more details.&lt;/li&gt;</div></td></tr> </table> Mon, 12 Aug 2019 18:44:03 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes Eby: Created page with '[http://www.broadinstitute.org/gsea/ GSEA Home] | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures…' https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4295&oldid=prev https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php?title=Web_site_v6.4_Release_Notes&diff=4295&oldid=prev <p>Created page with &#039;[http://www.broadinstitute.org/gsea/ GSEA Home] | [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures…&#039;</p> <p><b>New page</b></p><div>[http://www.broadinstitute.org/gsea/ GSEA Home] |<br /> [http://www.broadinstitute.org/gsea/downloads.jsp Downloads] | <br /> [http://www.broadinstitute.org/gsea/msigdb/ Molecular Signatures Database] | <br /> [http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page Documentation] |<br /> [http://www.broadinstitute.org/gsea/contact.jsp Contact] &lt;br /&gt;<br /> &lt;br /&gt;<br /> Release 6.4 of the GSEA public Web site :<br /> &lt;ul&gt;<br /> &lt;li&gt;Updated for &lt;a href=&quot;https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/MSigDB_v7.0_Release_Notes&quot;&gt;MSigDB 7.0&lt;/a&gt; and &lt;a href=&quot;https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4..0_Release_Notes&quot;&gt;GSEA 4.0.0&lt;/a&gt;. Streamlined the Downloads page.&lt;/li&gt;<br /> &lt;li&gt;The tools on the Investigate Gene Set page will now use a more constrained set of namespaces for the symbol conversion process, and require the user to specify the species of the symbols to be converted. This change is required for greater accuracy in the conversion process. See<br /> the [http://www.broadinstitute.org/gsea/msigdb/help_annotations.jsp| Help with Investigating Gene Sets] page for more details.&lt;/li&gt;<br /> &lt;li&gt;Beginning in MSigDB 7.0, we are now using ENSEMBL as the platform annotation authority. Identifiers for genes are mapped to their HGNC approved Gene Symbol and NCBI Gene ID through annotations extracted from ENSEMBL's BioMart data service, and will be updated at each MSigDB release with the latest available version of ENSEMBL.<br /> &lt;/li&gt;<br /> &lt;li&gt;Added the Supplementary Gene Sets page with contents for the SCSig Single Cell Identities collection.&lt;/li&gt;<br /> &lt;/ul&gt;</div> Mon, 12 Aug 2019 18:42:55 GMT Eby https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Talk:Web_site_v6.4_Release_Notes