FireCloud is now powered by Terra! -- STARTING MAY 1st, 2019 THIS WEBPAGE WILL NO LONGER BE UPDATED.
From now on, please visit the Terra Help Center for documentation, tutorials, roadmap and feature announcements.
Want to talk to a human? Email the helpdesk, post feature requests or chat with peers in the community forum.

In case you haven't met us yet, Beri and I (Sushma) are part of the Frontline Support Team here, aka the real humans behind the FireCloud and Terra forums and helpdesk. We're on deck every day answering questions and helping troubleshoot problems, so we have plenty of opportunity to get real friendly with both platforms - it comes with the territory. What you may not know is that we actually use FireCloud and Terra to create and maintain many of the Featured Workspaces, which on any given day might involve managing data, writing WDL workflows or hammering out some R or Python code in a Jupyter notebook. That's why we'll always be super sympathetic if you reach out to us; we've literally felt the same sink-back-into-your-chair frustrations as you at some point. On the flipside, we figure that when we feel joy or relief at some newly released feature that makes our work easier, that means you probably will too!

So we were talking about the upcoming transition from FireCloud to Terra, and we figured that we should share our unanimously favorite features, mighty or small, that didn’t exist in FireCloud but have really revolutionized our ability to get things done in Terra.

Without further ado, here is a run-down of our Top 3 draft picks, in no particular order:

A much improved data management interface

  • We hate having to deal with the FireCloud API to delete rows in the Data Model. Terra has blessed us with the ability to delete data entries by simply checking a box and clicking on that sweet Trash icon.
  • Also a huge annoyance in FireCloud, the rigid data model that forces you to mush your data into the cookie cutter TCGA schema of participant, sample, pair and so on. In Terra, you can just upload any custom table you like. Ah, the freedom.
  • We also really like the new File Browser in the Data tab - you can browse your bucket data without having to wrangle the Google Console in a separate browser window. Incidentally, you can select files from here to add to your Tool Configurations in the Tools tab too.

For those of you who are new to Data Model shenanigans, trust us when we say these features are gold.

A preview mode for notebooks

The engineers say there's not much they can do about the time it takes to spin up the notebook VM (or cluster), as that's apparently a Google thing. But they did put in an awesome preview feature for notebooks that lets you read through the contents and refresh your memory while you wait, which is quite an upgrade from watching a loading cursor.

It's way easier to retry failed workflows

Shockingly, there are times when my workflows don’t run perfectly. In FireCloud, this means I have to wrangle the list of failed workflows, create a brand new submission, and then start all over. On a large dataset, this gets beyond groan-worthy really fast. In Terra, with the click of a button!! we can retry just the failed workflows. So simple, yet so useful… There's a definite "one-click to joy" theme emerging with these Terra feature updates; we're loving it.

So overall it's nice that the newer greener UI is easy on the eyes, but really is what's on the inside that matters, and we have truly got all the feels for these super helpful new features. Check out the new app and let us know what are your personal favorites in the comments!

Return to top

Wed 20 Mar 2019
Comment on this article

- Recent posts

- Follow us on Twitter



RT @TerraBioApp: Terra #OpenScience Contest -- You be the judge! Over the past month we ran a contest in which four teams created workspace…
26 Jun 19
FireCloud project resources are affected by this GCP outage as well.
2 Jun 19
RT @jklemm: Also available on @BroadFireCloud where it was leveraged to process all of the RNA-Seq data from TCGA and GTEx through STAR-fus…
29 May 19
RT @TerraBioApp: Do you have a pet workflow or a favorite notebook? Have you thought about sharing them with the world, but keep pushing it…
18 May 19
RT @jklemm: Great meeting this week with #NCICloud and Data Commons Framework teams discussing cancer research priorities for #NCICommons.…
15 May 19

- Our favorite tweets from others

See the theme? Green!
24 Jul 19
I will be introducing Terra to aspiring bioinformatics researchers later this month. I discovered FireCloud (predec…
2 May 19
Pipelines API is used by a number of popular tools, such as Firecloud/Terra from @broadinstitute. @BroadFireCloud
11 Apr 19
The macaque genome isn't finished so it has over 200K contigs. I call them the Rhesus pieces.
15 Mar 19

See more of our favorite tweets...