Somatic copy number variant discovery (CNVs)
Best Practices Workflows | Created 2018-01-07 | Last updated 2018-01-09


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Purpose

Identify somatic copy number variant (CNVs) in a case sample. Requires an appropriate Panel of Normals (PON).



Reference Implementations

Pipeline Summary Notes Github FireCloud
Somatic CNV case sample Case BAM to CNV universal placeholder TBD
Somatic CNV PON creation Normal BAMs to PON universal placeholder TBD

A brand new version of these workflows is about to be released and will be made available within the next few days, along with the relevant documentation.


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