RNAseq short variant discovery (SNPs + Indels)
Best Practices Workflows | Created 2018-01-09 | Last updated 2018-01-09


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Purpose

Identify short variants (SNPs and Indels) in RNAseq data.


Diagram is not available


Reference Implementations

Pipeline Summary Notes Github FireCloud
RNAseq short variant per-sample calling BAM to VCF universal (expected) :) TBD

Expected input

This workflow is designed to operate on a set of samples one sample at a time; joint calling RNAseq is not supported.


_This workflow is in development; detailed documentation will be made available when the workflow is considered fully released.


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