Hi everyone,

The GATK team recently presented a broad overview of sequencing analysis and variant calling using GATK 2.0 at the Broad Institute Medical and Population Genetics Program meeting. This slides are a great introduction to all the latest improvements in the GATK that are in version 2.0.

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Broad's Data Science group is hosting "API, Portals, and JIRA - Oh my!" a Write The Docs Meetup Tues 11/1 at 6pm https://t.co/BFT0MT9Vdr
28 Oct 16
@hoffsbeefs Yes, multithreading can explain some marginal differences. For purely deterministic behavior, it should be disabled.
25 Oct 16
@hoffsbeefs Yes it should be deterministic, given same data, same parameters and no multithreading.
25 Oct 16
RT @BroadGenomics: Missed #GATK WKSP at #ASHG16? 10am meet Geraldine at booth 329 - Broad’s GATK Guru @gatk_dev #BroadGenomicsExperts https…
20 Oct 16
RT @NJL_NGS: Broad Institute Workbench workshop now at #ashg16. https://t.co/t6L452mp8a
19 Oct 16

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Had a really nice time in Vancouver at #ASHG16, also known as "The @dgmacarthur Lab Meeting"
24 Oct 16
Real motivation behind gnomAD: all of you have now learnt the proper capitalization of ExAC, and we felt you needed a new challenge. #ASHG16
20 Oct 16
Asked a question, speaker jokes not to edit your BAM header and expect GATK to let you get away with it.
19 Oct 16
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30 Sep 16
I've easily written my first custom ReadFilter for GATK. The @gatk_dev 's toolkit is a great example of programming.
21 Sep 16
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