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I found this broken link
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I think the correct link should be this one http://gatkforums.broadinstitute.org/discussion/39/variant-quality-score-recalibration
Hi, I wanted to get more information about the DepthOfCoverage walker -- the link http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_coverage_DepthOfCoverage.html is broken. Is there an alternate link with the details?
@jjmmii, thanks for the report. The link has been fixed.
@h_manoj, thanks, we're aware of this broken link. There is currently no alternate for that content, but you can find key information to use the tool [here](http://www.broadinstitute.org/gatk/guide/article?id=40) and [here](https://github.com/broadgsa/gatk/blob/master/public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverage.java).
Is the ftp server running? (ftp.broadinstitute.org) Trying to download GATK lite; request times out, unable to ping server.
Sorry to get back to you so late, @dickinsw, I was in holiday-induced hibernation.
We've had a few minor hiccups in server performance; should be all better now, but let us know if you experience any further problems.