If you encounter a broken link, please report it here.

To help us fix it, please tell us what is the link and what page you found it on.

Thank you!


jjmmii


Hi, I found this broken link http://www.broadinstitute.org/gatk/guide/workflows#variant_quality_score_recalibration on this page http://www.broadinstitute.org/gatk/guide/article?id=1268

Tue 6 Nov 2012

jjmmii


I think the correct link should be this one http://gatkforums.broadinstitute.org/discussion/39/variant-quality-score-recalibration

Tue 6 Nov 2012

h_manoj


Hi, I wanted to get more information about the DepthOfCoverage walker -- the link http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_coverage_DepthOfCoverage.html is broken. Is there an alternate link with the details?

Tue 6 Nov 2012

Geraldine_VdAuwera


@jjmmii, thanks for the report. The link has been fixed. @h_manoj, thanks, we're aware of this broken link. There is currently no alternate for that content, but you can find key information to use the tool [here](http://www.broadinstitute.org/gatk/guide/article?id=40) and [here](https://github.com/broadgsa/gatk/blob/master/public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverage.java).

Tue 6 Nov 2012

dickinsw


Is the ftp server running? (ftp.broadinstitute.org) Trying to download GATK lite; request times out, unable to ping server. Regards

Tue 6 Nov 2012

Geraldine_VdAuwera


Sorry to get back to you so late, @dickinsw, I was in holiday-induced hibernation. We've had a few minor hiccups in server performance; should be all better now, but let us know if you experience any further problems.

Tue 6 Nov 2012




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