Here is a Dropbox link to the presentations given at the Dec 4-5 GATK workshop:

https://www.dropbox.com/sh/0puyz82ecswm4ig/V2fW--1ZFS


Geraldine_VdAuwera


Here is the link to the XHMM presentation: http://db.tt/ljmY7MrG

Tue 4 Dec 2012

njolstad


Well presented and thanks for the slides - seems very useful for my future work.

Tue 4 Dec 2012

HarryPotter87


Thank you for the slides, Geraldine_VdAuwera. I'm reading them in order to learn GATK. What is the reference genome for the tutorial (.fa) and where can i download it? I tried with http://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/ (chr 20), but it doesn't seem to work. Thank you very much again.

Tue 4 Dec 2012

Geraldine_VdAuwera


You can find the files in our the resources bundle on our FTP server; see instructions here: http://www.broadinstitute.org/gatk/guide/article?id=1213

Tue 4 Dec 2012




At a glance



Follow us on Twitter

GATK Dev Team

@gatk_dev

RT @dgmacarthur: Get in on the ground floor with an amazing team building software that's already transforming genomic analysis. https://t.…
26 May 17
I added a video to a @YouTube playlist https://t.co/fpNmKf6jlP GATK4: speed optimizations, new tools, and open source licensing
26 May 17
I added a video to a @YouTube playlist https://t.co/Bur7IbDefW GATK4: speed optimizations, new tools, and open source licensing - Open
26 May 17
I added a video to a @YouTube playlist https://t.co/y2zRjExH9v GATK4: speed optimizations, new tools, and open source licensing -
26 May 17
RT @BroadGenomics: @gatk_dev experts are at the @IntelHealth Hospitality Suite (Dartmouth Room) until 11:30am today! Stop by to ask about G…
25 May 17

Our favorite tweets from others

Huge thanks to the @gatk_dev team: they return to BSD license (https://t.co/xW80GJctrT)! Watch out for the #GATK package in #Bioconda!
26 May 17
This is great GATK @gatk_dev 4 open source (again), BSD3! 💯 https://t.co/jmsStAVE6S
25 May 17
Wooow, really exiting and cheerful news! Will load it up on our server for sure! Congrats @gatk_dev https://t.co/9ppcH4I4Mh
25 May 17
Kudos and congratulations to the @broadinstitute and @gatk_dev for open source release of GATK4 and other tools.
25 May 17
best error output: Please do NOT post this error to the GATK forum unless you have really tried to fix it yourself.
4 Apr 17
See more of our favorite tweets...
Search blog by tag

appistry ashg ashg16 benchmarks best-practices bug bug-fixed cloud cluster cnv collaboration community compute conference conferences cram cromwell depthofcoverage diagnosetargets error forum gatk3 gatk4 genotype-refinement genotypegvcfs google grch38 gvcf haploid haplotypecaller help hg38 holiday hts htsjdk ibm intel java8 job job-offer jobs license meetings mutect mutect2 ngs outreach pairhmm parallelism patch pdf performance picard pipeline plans ploidy polyploid poster presentations printreads profile promote release release-notes rnaseq runtime saas script sequencing service slides snow speed support talks team terminology topstory troll tutorial unifiedgenotyper vcf-gz version-highlights wdl workflow workshop xhmm