We've realized that having separate Team / Community Q&A sections is confusing and unnecessary, so we are going to merge the two. From now on there will only be one Q&A section (Ask the Team). We invite you to ask any questions related to the GATK and its application in that category. We welcome answers and comments from everyone in the community in these discussions; if you know something, say something! And of course you are also always welcome to comment on tool and method documentation articles.


Comment on this article in the forum



At a glance



Follow us on Twitter

GATK Dev Team

@gatk_dev

RT @broadinstitute: .@NIH funds available for investigators in need of cloud computing & storage resources. Apply: https://t.co/IoiZMUNBM8
26 Apr 17
@DataKimist Enjoy! And let us know if we can help.
19 Apr 17
@mjpchaisson Not meant that way - just depending on what you're doing you may want to cite earlier framework or lat… https://t.co/QpIbwRf0bC
18 Apr 17
@cabioinformatic For more recent versions see https://t.co/QCbos5KBWw
15 Apr 17
@thatdnaguy @notigor @David_McGaughey @brent_p Indel Realign is redundant with assembly-based realign done by HC, w… https://t.co/77Lyil7BJY
13 Apr 17

Our favorite tweets from others

best error output: Please do NOT post this error to the GATK forum unless you have really tried to fix it yourself.
4 Apr 17
From the @gatk_dev page describing .vcf files: "Don't write home-brewed VCF parsing scripts. It never ends well” https://t.co/28KcRoV14j
28 Feb 17
Our 3-day course on GATK https://t.co/mtN60KRTyS finished - 38 participants very happy! Big thanks to @gatk_dev team for excellent lessons.
24 Feb 17
@froggleston @dgmacarthur Sounds like ExAC is reaching Uber stage. ‘Uber but for pizza’. ‘ExAC but for wheat’.
14 Jan 17
#ESRenpeinture grad school - postdoc - after postdoc https://t.co/o3vQMgBDgk
6 Jan 17
See more of our favorite tweets...
Search blog by tag

appistry ashg ashg16 benchmarks best-practices bug bug-fixed cloud cluster cnv collaboration community compute conference conferences cram cromwell depthofcoverage diagnosetargets error forum gatk3 gatk4 genotype-refinement genotypegvcfs google grch38 gvcf haploid haplotypecaller help hg38 holiday hts htsjdk ibm intel java8 job job-offer jobs license meetings mutect mutect2 ngs outreach pairhmm parallelism patch pdf performance picard pipeline plans ploidy polyploid poster presentations printreads profile promote release release-notes rnaseq runtime saas script sequencing service slides snow speed status support talks team terminology topstory troll tutorial unifiedgenotyper vcf-gz version-highlights wdl workflow workshop xhmm