We're planning to organize online live Q&A sessions in which you will be able to submit questions (within a predefined topic, eg. "base recalibration" or "variant calling") for the developers to answer. To help us choose between several software options, we would like to know which of the following options would be the most valuable to you (please choose one):

  1. Ability to vote for questions, so that the most popular questions get answered (we expect a lot of questions and will probably not have time to answer all of them).

  2. Ability to chat directly with us if your question is picked, so that if our answer doesn't really answer your question you can clarify or ask for more details.

Feel free to tell us in the comments what other features would be useful.


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@geoffjentry @PatriciaMBrent Indel realn gone now; much faster BQSR + Sparkified tools in GATK4a. And wider scope of application/ use cases.
9 Dec 16
@geoffjentry @PatriciaMBrent B fair, other slide says results similar. Not uncommon for benchmark tests. But speed comparison v outdated 1/2
9 Dec 16
RT @geoffjentry: Talk by Stavros Papadopoulos about TileDB from @intel - used by @BroadGenomics to power our joint genotyping https://t.co/
8 Dec 16
@iskander @NJL_NGS Hm. Can you please post this in the forum?
8 Dec 16
@iskander @NJL_NGS Treat them like any other read, no special handling. Problems arise in CIGAR functions that don’t know how to handle Ns.
7 Dec 16

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