We're very pleased to announce that we have finally finished our big rewrite of the Best Practices documentation. We hope that the new format, which you can find here, will prove more user-friendly, searchable and overall more helpful than the previous version.

We have a few more improvements in mind (e.g. a clickable image map of the workflow) and there may be a few bugs here and there to iron out. So please feel free to comment on this announcement and give us feedback, whether flattering or critical, so we can improve it to help you as much as possible.


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@DataKimist Enjoy! And let us know if we can help.
19 Apr 17
@mjpchaisson Not meant that way - just depending on what you're doing you may want to cite earlier framework or lat… https://t.co/QpIbwRf0bC
18 Apr 17
@cabioinformatic For more recent versions see https://t.co/QCbos5KBWw
15 Apr 17
@thatdnaguy @notigor @David_McGaughey @brent_p Indel Realign is redundant with assembly-based realign done by HC, w… https://t.co/77Lyil7BJY
13 Apr 17
RT @edgenome: Learn GATK Best Practices from @gatk_dev @broadinstitute experts, Edinburgh, 17-19 July: https://t.co/XqJP6e3XbK
13 Apr 17

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best error output: Please do NOT post this error to the GATK forum unless you have really tried to fix it yourself.
4 Apr 17
From the @gatk_dev page describing .vcf files: "Don't write home-brewed VCF parsing scripts. It never ends well” https://t.co/28KcRoV14j
28 Feb 17
Our 3-day course on GATK https://t.co/mtN60KRTyS finished - 38 participants very happy! Big thanks to @gatk_dev team for excellent lessons.
24 Feb 17
@froggleston @dgmacarthur Sounds like ExAC is reaching Uber stage. ‘Uber but for pizza’. ‘ExAC but for wheat’.
14 Jan 17
#ESRenpeinture grad school - postdoc - after postdoc https://t.co/o3vQMgBDgk
6 Jan 17
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