Known Issues with Mutect2 GATK4.1
Solutions to Problems | Created 2019-03-20 | Last updated 2019-03-20


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  • Error: java.lang.IllegalArgumentException: log10p: Log10-probability must be 0 or less when running FilterMutectCalls(GATK4.1) to Filter VCF results called by Mutect2. Solution: This error is fixed in master as of March 19th 2019. It will be released in the GATK version 4.1.1.0.

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