Very complete. Much documents. So quality. WOW.
All you need to start using GATK today
WHAT'S IN THE BOX
Usage documentation for each tool
Analysis details and recommendations
BEFORE YOU ASK
Questions that people often ask
Solutions for common problems and errors
Workflows for variant discovery analysis
Materials from workshops and conferences
Step-by-step instructions targeted by use case
Definitions of terms used in the docs
CHANGE YOU CAN BELIEVE IN
Historical record of changes by version
Status of bug reports and feature requests
Tools and scripts for analysis pipelines
GATK on the Cloud
Coming soon to a laptop near you!
Note that the information in this documentation guide is targeted at end-users. For developers, the source code and related resources are available on GitHub.