Showing docs for version 3.6-0 | The latest version is 4.1.4.0


MissingReadGroupFilter

Filter out reads without read group information

Category Read Filters


Overview

Many GATK tools are dependent on having read group information in order to operate correctly. This filter excludes any reads that have not been appropriately identified.

Usage example

     java -jar GenomeAnalysisTk.jar \
         -T ToolName \
         -R reference.fasta \
         -I input.bam \
         -o output.file \
         -rf MissingReadGroup
 

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GATK version 3.6-0-g89b7209 built at 2017/02/09 12:52:48.