Showing docs for version 3.6-0 | The latest version is 4.1.4.0


NoOriginalQualityScoresFilter

Filter out reads that do not have an original quality quality score (OQ) tag

Category Read Filters


Overview

The OQ tag can be added during the base recalibration process in order to preserve original information.

Usage example

     java -jar GenomeAnalysisTk.jar \
         -T ToolName \
         -R reference.fasta \
         -I input.bam \
         -o output.file \
         -rf NoOriginalQualityScores
 

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GATK version 3.6-0-g89b7209 built at 2017/02/09 12:52:48.