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Allele specific Rank Sum Test for insert sizes of REF versus ALT reads

Category Annotation Modules

VCF Field INFO (variant-level)

Type ActiveRegionBasedAnnotation, BetaTestingAnnotation, ExperimentalAnnotation, ReducibleAnnotation

Header definition line
  • INFO=<ID=AS_InsertSizeRankSum,Number=A,Type=Float,Description="Allele-specific Insert Size Rank Sum">

  • Overview

    This annotation tests whether the insert sizes of reads supporting the REF allele and ALT allele are roughly equal. In case of multiple alternate alleles, each alternate allele is considered separately.

    Statistical notes

    See the method document for a more detailed explanation of the rank sum test.

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    GATK version 3.6-0-g89b7209 built at 2017/02/09 12:52:48.