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List samples that are non-reference at a given site

Category Annotation Modules

VCF Field INFO (variant-level)

Header definition line
  • INFO=<ID=Samples,Number=.,Type=String,Description="List of polymorphic samples">

  • Overview

    The output is a list of the samples that are genotyped as having one or more variant alleles. This allows you to easily determine which samples are non-reference (heterozygous or homozygous-variant) and compare them to samples that are homozygous-reference.

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    GATK version 3.6-0-g89b7209 built at 2017/02/09 12:52:48.