Showing docs for version 3.6-0 | The latest version is 220.127.116.11
Sum of evidence in reads supporting each allele for each sample
FORMAT (sample genotype-level)
In the domain of somatic variants, a variant call can be supported by a few high quality reads. The
BaseQualitySumPerAlleleBySample annotation aims to give the user an estimate of the quality of the evidence supporting
BaseQualitySumPerAlleleBySample is called and used by MuTect2 for variant filtering. This annotation is applied to SNPs
and INDELs. Qualities are not literal base qualities, but instead are derived from the per-allele likelihoods derived
from the assembly engine.
- At this time, BaseQualitySumPerAlleleBySample can only be called from MuTect2
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GATK version 3.6-0-g89b7209 built at 2017/02/09 12:52:48.