Platform454Filter

Filter out reads produced by 454 technology

Category Read Filters


Overview

Reads produced by 454 technology should not be processed by the GATK's indel realignment tools. This filter is applied by those tools to enforce that rule.

Usage example

     java -jar GenomeAnalysisTk.jar \
         -T ToolName \
         -R reference.fasta \
         -I input.bam \
         -o output.file \
         -rf Platform454
 

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GATK version 3.8-0-ge9d806836 built at 2017/07/29 01:40:22.