Summarize genotype statistics from all samples at the site level
INFO=<ID=NCC,Number=1,Type=Integer,Description="Number of no-called samples">
INFO=<ID=GQ_MEAN,Number=1,Type=Float,Description="Mean of all GQ values">
INFO=<ID=GQ_STDDEV,Number=1,Type=Float,Description="Standard deviation of all GQ values">
This annotation collects several genotype-level statistics from all samples and summarizes them in the INFO field. The following statistics are collected:
These summaries can all be recomputed from the genotypes on the fly but it is a lot faster to add them here as INFO field annotations.
GATK version 3.8-0-ge9d806836 built at 2017/07/29 01:40:22.