Keep only reads containing good CIGAR string
Keep only reads containing good CIGAR strings.
Good CIGAR strings have the following properties:
- Valid according to the SAM specifications.
- Does not start or end with deletions (with or without preceding clips).
- Does not have consecutive deletion/insertion operators.
Return to top
General Documentation |
Tool Docs Index Tool Docs Index |
GATK version 184.108.40.206 built at 10-58-2018 11:58:10.