NonZeroReferenceLengthAlignmentReadFilter

Filter out reads that do not align to the reference

Category Read Filters


Overview

Filter out reads that do not align to the reference. Filter interprets each of the CIGAR operators M, D, N, = and X as alignment.

Return to top


See also General Documentation | Tool Docs Index Tool Docs Index | Support Forum

GATK version 4.0.0.0 built at 10-58-2018 11:58:10.