ValidAlignmentStartReadFilter

Keep only reads with a valid alignment start

Category Read Filters


Overview

Keep only reads with a valid alignment start (POS larger than 0) or is unmapped.

See MappedReadFilter for criteria defining an unmapped read.

Additional references

See these additional references.


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GATK version 4.0.0.0 built at 10-58-2018 11:58:10.