Showing tool doc from version 4.0.3.0 | The latest version is 4.1.3.0

ProperlyPairedReadFilter

Keep only reads that are properly paired

Category Read Filters


Overview

Keep only paired reads that are properly paired (0x1 and 0x2). Removes single ended reads.

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GATK version 4.0.3.0 built at 09-43-2018 09:43:10.