Showing tool doc from version 4.0.3.0 | The latest version is 4.1.3.0

ValidAlignmentStartReadFilter

Keep only reads with a valid alignment start

Category Read Filters


Overview

Keep only reads with a valid alignment start (POS larger than 0) or is unmapped.

See MappedReadFilter for criteria defining an unmapped read.

Additional references

See these additional references.


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GATK version 4.0.3.0 built at 09-43-2018 09:43:10.