Showing tool doc from version 4.0.3.0 | The latest version is 4.1.4.1

MappingQuality

Median mapping quality of reads supporting each allele (MMQ)

Category Variant Annotations


Overview

Median mapping quality of reads supporting each alt allele.

The output is an array containing, for each alt allele, the median mapping quality over all reads that best match that allele.


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GATK version 4.0.3.0 built at 09-43-2018 09:43:10.