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List of samples that are not homozygous reference at a variant site (Samples)

Category Variant Annotations


List samples that are non-reference at a given variant site

The output is a list of the samples that are genotyped as having one or more variant alleles. This allows you to easily determine which samples are non-reference (heterozygous or homozygous-variant) and compare them to samples that are homozygous-reference. This annotation is particularly useful for large cohorts where the genotype fields are difficult to manually match with sample names.

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GATK version built at 09-43-2018 09:43:10.