Filter out unmapped reads
Filter out unmapped reads.
Unmapped reads are defined by three criteria:
- SAM flag value 0x4
- An asterisk for reference name or RNAME (column 3 of a SAM record)
- A zero value for leftmost mapping position for POS (column 4 of SAM record)
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GATK version 126.96.36.199 built at 23-40-2018 11:40:56.