RMSMappingQuality

Root mean square of the mapping quality of reads across all samples (MQ)

Overview

Root Mean Square of the mapping quality of reads across all samples.

This annotation provides an estimation of the overall mapping quality of reads supporting a variant call, averaged over all samples in a cohort.

The root mean square is equivalent to the mean of the mapping qualities plus the standard deviation of the mapping qualities.

MappingQualityRankSumTest compares the mapping quality of reads supporting the REF and ALT alleles.

GATK version 4.0.4.0 built at 23-40-2018 11:40:56.