Showing tool doc from version 4.1.0.0 | The latest version is 4.1.4.1

NonZeroReferenceLengthAlignmentReadFilter

Filter out reads that do not align to the reference

Category Read Filters


Overview

Filter out reads that do not align to the reference. Filter interprets each of the CIGAR operators M, D, N, = and X as alignment.

Return to top


See also General Documentation | Tool Docs Index Tool Documentation Index | Support Forum

GATK version 4.1.0.0 built at Wed, 30 Jan 2019 10:21:04 +0530.