Showing tool doc from version 4.1.0.0 | The latest version is 4.1.2.0

ValidAlignmentStartReadFilter

Keep only reads with a valid alignment start

Category Read Filters


Overview

Keep only reads with a valid alignment start (POS larger than 0) or is unmapped.

See MappedReadFilter for criteria defining an unmapped read.

Additional references

See these additional references.


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GATK version 4.1.0.0 built at Wed, 30 Jan 2019 10:21:04 +0530.