Filter out unmapped reads
Filter out unmapped reads.
Unmapped reads are defined by three criteria:
- SAM flag value 0x4
- An asterisk for reference name or RNAME (column 3 of a SAM record)
- A zero value for leftmost mapping position for POS (column 4 of SAM record)
Return to top
General Documentation |
Tool Docs Index Tool Documentation Index |
GATK version 188.8.131.52 built at Wed, 9 Oct 2019 15:19:59 -0400.