Showing tool doc from version 4.1.4.0 | The latest version is 4.1.4.0

NotSecondaryAlignmentReadFilter

Filter out reads representing secondary alignments

Category Read Filters


Overview

Filter out reads representing secondary alignments (0x100).

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GATK version 4.1.4.0 built at Wed, 9 Oct 2019 15:19:59 -0400.