Showing tool doc from version 4.1.1.0 | The latest version is 4.1.1.0

NotSecondaryAlignmentReadFilter

Filter out reads representing secondary alignments

Category Read Filters


Overview

Filter out reads representing secondary alignments (0x100).

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GATK version 4.1.1.0 built at Wed, 3 Apr 2019 09:19:24 -0400.