Showing tool doc from version 4.1.2.0 | The latest version is 4.1.2.0

ReadGroupReadFilter

Keep only reads from the specified read group

Category Read Filters


Overview

Keep only reads from the specified read group. Discards reads lacking an RG tag.

Matching is done by case-sensitive exact match.

ReadGroupReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s) Default value Summary
Required Arguments
--keep-read-group
null The name of the read group to keep

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.


--keep-read-group / NA

The name of the read group to keep

R String  null


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GATK version 4.1.2.0 built at Tue, 23 Apr 2019 14:55:55 -0400.