Showing tool doc from version 4.1.4.0 | The latest version is 4.1.4.0

SampleReadFilter

Keep only reads for a given sample

Category Read Filters


Overview

Keep only reads for a given sample.

Matching is done by case-sensitive exact match.

SampleReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s) Default value Summary
Required Arguments
--sample
[] The name of the sample(s) to keep, filtering out all others

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.


--sample / -sample

The name of the sample(s) to keep, filtering out all others

R Set[String]  []


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GATK version 4.1.4.0 built at Wed, 9 Oct 2019 15:19:59 -0400.