Summary of genotype statistics from all samples (NCC, GQ_MEAN, GQ_STDDEV)
Summarize genotype statistics from all samples at the site level
This annotation collects several genotype-level statistics from all samples and summarizes them in the INFO field. The following statistics are collected:
- Number of called chromosomes (should amount to ploidy * called samples)
- Number of no-called samples
- p-value from Hardy-Weinberg Equilibrium test
- Mean of all GQ values
- Standard deviation of all GQ values
These summaries can all be recomputed from the genotypes on the fly but it is a lot faster to add them here as INFO field annotations.
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GATK version 220.127.116.11 built at Wed, 30 Jan 2019 10:21:04 +0530.