Annotate with local reference bases (REF_BASES)
Local reference context at a variant position.
The annotation gives ten reference bases each to the left and right of the variant start and the start base for a total of 21 reference bases.
Start position is defined as one base before indels. For example, the reference context AAAAAAAAAACTTTTTTTTTT would apply to a SNV variant
context with ref allele C and alt allele G as well as to a deletion variant context with ref allele CT and alt allele C.
Return to top
General Documentation |
Tool Docs Index Tool Documentation Index |
GATK version 220.127.116.11 built at Tue, 23 Apr 2019 14:55:55 -0400.