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SampleList

List of samples that are not homozygous reference at a variant site (Samples)

Category Variant Annotations


Overview

List samples that are non-reference at a given variant site

The output is a list of the samples that are genotyped as having one or more variant alleles. This allows you to easily determine which samples are non-reference (heterozygous or homozygous-variant) and compare them to samples that are homozygous-reference. This annotation is particularly useful for large cohorts where the genotype fields are difficult to manually match with sample names.


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GATK version 4.1.2.0 built at Tue, 23 Apr 2019 14:55:55 -0400.