List of samples that are not homozygous reference at a variant site (Samples)
The output is a list of the samples that are genotyped as having one or more variant alleles. This allows you to easily determine which samples are non-reference (heterozygous or homozygous-variant) and compare them to samples that are homozygous-reference. This annotation is particularly useful for large cohorts where the genotype fields are difficult to manually match with sample names.
GATK version 188.8.131.52 built at Tue, 23 Apr 2019 14:55:55 -0400.