Posted in GenomeSTRiP Documentation on 2012-09-12 18:39:20 | Last updated on 2012-09-21 23:17:19

Comments (0)

1. Introduction

The MergeGenotyperOutput utility merges the results of a parallel genotyping run into genome-wide output files.

In addition to merging the main VCF files, this utility will also merge the auxilliary output files (but leave them in the run directory).

2. Inputs / Arguments

  • -runDirectory <directory> : The run directory where the output files from each partition are stored.

3. Outputs

  • -O <vcf-file> : The location to write the merged output VCF file.

Return to top Comment on this article in the forum