Cosi2: An efficient simulator of exact and approximate coalescent with selection

This is the website for cosi2, an efficient coalescent simulator with support for simulating selection.

Downloads:

Download cosi2 source code

Quick start instructions:

gunzip cosi-2.0.tar.gz
tar xvf cosi-2.0.tar
cd cosi-2.0
./configure
make

Then,

coalescent -p paramfile -m

will execute the simulation, writing results to standard output in ms simulator format.

Detailed documentation is found here .