Analysis Summary

Job ID is 1266306690		TIME: 2010-02-16 2:51:30

Using the CEU Human HapMap and the HG17 Assembly of the Human Genome
The Functional Datasource is text_2009_03

Using default gene list (19879 genes):
http://www.broadinstitute.org/mpg/grail/functionDatabases/text_2009_03/allHumanGenes
A total of 19879 genes in this list

Queries and Seed Regions are set equal
There are 39 valid Query regions
50 query genes within gene list analyzed



Genomic Regions


For full set of genes used in the analysis for each genomic region click here:
	Query Regions	Seed Regions


REGION	GRAIL p-value	CANDIDATE GENE(S)
------	-------------	-----------------
rs11762978	0.21156503	NOS3
rs9999836	1	KIAA0232
rs2544401	0.15723842	FLJ20184
rs1225828	0.51211739	GALNT5
rs2866781	0.15723842	FLJ20184
rs10885530	0.31087989	ADRB1
rs3819147	0.70029835	UMODL1
rs460182	0.66507076	RCL1
rs2050394	0.31087989	ADRB1
rs1405476	0.509361	SDK1
rs6715170	0.62810052	OXER1
rs6671268	0.7909566	RPL5
rs7923928	N/A	
rs843339	0.79289799	DVL3
rs7894391	N/A	
rs2372848	0.39826557	IGFBP2
rs1438199	0.69966908	CSMD1
rs12517872	N/A	
rs6578334	0.54212637	MRGPRE
rs4594497	0.62810052	OXER1
rs10885476	0.60300136	HABP2
rs4964483	0.78542659	RIC8B
rs2830852	N/A	
rs9315439	0.36064042	GJB6
rs10490905	0.31087989	ADRB1
rs2374432	0.62810052	OXER1
rs12549314	0.86984793	GNRH1
rs10091211	0.69966908	CSMD1
rs10266157	N/A	
rs2830848	N/A	
rs11139426	0.27493767	TLE1
rs1414110	0.1558668	NDFIP2
rs2216515	0.15723842	FLJ20184
rs7984156	0.1558668	NDFIP2
rs615020	0.354958	HFM1
rs6742450	0.62810052	OXER1
rs2553456	0.15723842	FLJ20184
rs7908145	N/A	
rs10048146	0.4824643	FOXC2



Keywords Describing Functional Connections

'enos'
'nitric'
'oxide'
'endothelial'
'synthase'
'success'
'smoking'
'forkhead'
'smokers'
'golgi'
'placebo'
'overlap'
'subjects'
'clustered'
'substances'
'dependence'
'trial'
'snps'
'centers'
'participants'



GRAIL data for selected individual genes of interest

GENE	GRAIL p-value	SELECTED SIMILAR GENES (Rank in parantheses)
----	-------------	--------------------------------------------
FLJ20184	0.055428344	CSMD1(51), ADRB1(503)
NOS3	0.076177306	ATG9B(5), ADRB1(25)
FOXC2	0.15182576	FOXL1(1), FOXF1(3), EBF2(133), RFX4(241), ADRB1(358)
NDFIP2	0.1558668	GSTCD(81), KCTD9(160), INTS12(359)
KCNH2	0.16982647	KCNG3(159), ADRB1(182), HTR3E(623)
OXER1	0.21908027	MRGPRE(122), ADRB1(599)
MRGPRE	0.22924702	EBF2(152), OXER1(210), ADRB1(473)
DVL3	0.27014454	FOXL1(192), EBF2(196), FOXF1(258), KIAA0232(565)
TLE1	0.27493767	EBF2(80), FOXF1(166), FOXL1(184), MTA3(423)
ADRB1	0.31087989	NOS3(62)
RIC8B	0.31939681	EBF2(461), UMODL1(569)
RPL5	0.32382499	RCL1(153), ABCF3(516)
MTERFD3	0.32576923	KIAA0232(155)
GNRH1	0.33489499	EBF2(184), FOXF1(376), ADRB1(548)
HFM1	0.354958	MTHFSD(197), ABCF3(525), KCTD9(567), RCL1(603)
INTS12	0.35503266	KCTD9(92), GSTCD(184)
FOXL1	0.35987083	FOXF1(1), FOXC2(3), EBF2(258), DVL3(286), RFX4(315)
GJB6	0.36064042	
HAAO	0.36920679	RCL1(373)
HABP2	0.36992172	FOXF1(409), IGFBP2(597)
KCNG3	0.38885951	KCNH2(107), HTR3E(302)
IGFBP2	0.39826557	FOXF1(422), HABP2(470)
GSTCD	0.40126061	KCTD9(141), INTS12(247)
ATG9B	0.40320252	NOS3(1), FOXF1(237)
EIF2B5	0.41674035	ABCF3(25), RCL1(290)
KCTD9	0.41948868	INTS12(199), GSTCD(202)
C12orf23	0.44066965	KIAA0232(335), C11orf36(624)
MTHFSD	0.44128247	KCTD9(203), C12orf23(557), KIAA0232(613)
UMODL1	0.45254986	EBF2(349), KIAA0232(401)
GFI1	0.47495107	EVI5(3), EBF2(198), FOXF1(201), FOXL1(439)
RFX4	0.4800169	FOXF1(186)
NRAP	0.48318181	MTHFSD(306)
ABCG1	0.50144421	ABCF3(102), FOXF1(566)
SDK1	0.509361	KIAA0232(432), FOXF1(561), EBF2(562)
GALNT5	0.51211739	EBF2(213), RFX4(521)
ABCF3	0.52034122	KCTD9(384), RCL1(596)
FOXF1	0.52059774	FOXL1(34), EBF2(92), FOXC2(180)
ZNF195	0.54127465	KIAA0232(502)
MTA3	0.58878022	
HTR3E	0.61138544	KCNH2(451), RFX4(618)
EBF2	0.61307559	FOXF1(175)
DOCK5	0.62307735	FOXF1(533)
RCL1	0.66507076	GSTCD(387), KCTD9(431), INTS12(574)
CDCA2	0.66796676	
AP2M1	0.69548589	
CSMD1	0.69966908	
EVI5	0.71596059	GFI1(11)
C11orf36	0.77427218	C11orf36(164)
FAM69A	0.84513441	FAM69A(16), KCTD9(514)
KIAA0232	1