Analysis Summary

Job ID is 1267023069		TIME: 2010-02-24 9:51:09

Using the CEU Human HapMap and the HG18 Assembly of the Human Genome
The Functional Datasource is text_2009_03

Using default gene list (19879 genes):
http://www.broadinstitute.org/mpg/grail/functionDatabases/text_2009_03/allHumanGenes
A total of 19879 genes in this list

Queries and Seed Regions are set equal
There are 19 valid Query regions
40 query genes within gene list analyzed



Genomic Regions


For full set of genes used in the analysis for each genomic region click here:
	Query Regions	Seed Regions


REGION	GRAIL p-value	CANDIDATE GENE(S)
------	-------------	-----------------
rs7671167	0.27071029	TIGD2
rs13180	0.23408268	IREB2
rs12914385	0.59921112	LOC123688
rs996414	0.43009446	C9orf82
rs1512288	0.5561412	HHIP
rs3736329	0.39084156	MIA
rs4937917	0.18554569	GLB1L3
rs11855351	0.04856429	ZFAND6
rs11576107	0.21901739	FCRLB
rs7325852	N/A	
rs16974868	0.17631499	AKAP13
rs734621	0.21945088	CSMD3
rs17659248	0.12968261	MLSTD1
rs9571178	N/A	
rs1447013	0.57914314	ZNF706
rs4830489	0.59581294	FAM9C
rs7775523	0.080691742	CDKAL1
rs12768993	0.11414583	PLCE1
rs713636	0.34694989	VPREB1



Keywords Describing Functional Connections

'genome'
'melanoma'
'phospholipase'
'epsilon'
'risk'
'lambda'
'exchange'
'diabetes'
'elements'
'guanine'
'anchoring'
'fatty'
'variants'
'snps'
'acyl'
'association'
'wide'
'lung'
'rhoa'
'prostate'



GRAIL data for selected individual genes of interest

GENE	GRAIL p-value	SELECTED SIMILAR GENES (Rank in parantheses)
----	-------------	--------------------------------------------
ZFAND6	0.02458434	ZNF706(11), FAM13A1(509)
MIA	0.06007915	RAB4B(12), FCRLA(70), MAPK1(107)
AKAP13	0.062609847	MAPK1(84), PLCE1(141), PSMA4(519)
GLB1L3	0.066124659	ZNF706(199), C9orf82(258)
MLSTD1	0.06709197	ZNF706(40)
ITPKC	0.067219177	MAPK1(85), PPM1F(106), PLCE1(156)
RAB4B	0.072611625	ZNF706(51)
CDKAL1	0.080691742	LOC123688(32), ZNF706(424), FAM13A1(587)
VPREB1	0.10104774	FCRLB(26), FCRLA(312), MAPK1(544)
PLCE1	0.11414583	MAPK1(40), AKAP13(88)
FCRLB	0.1162678	FCRLA(1), VPREB1(17)
PDE8A	0.11936521	MAPK1(83), AKAP13(167), PLCE1(405)
LOC123688	0.12244637	ZNF706(196), FAM13A1(442)
EGLN2	0.12279267	MAPK1(51), PSMA4(171), ERGIC2(466)
ERGIC2	0.13740451	ZNF706(103)
TIGD2	0.14601539	ZNF706(94)
TOP3B	0.1465828	ZNF706(96)
FAM13A1	0.18630097	ZNF706(169)
FCRLA	0.19312445	FCRLB(1), VPREB1(122), GLB1L2(446), RAB4B(620)
CSMD3	0.21945088	FAM13A1(306), ZNF706(617)
IREB2	0.23408268	EGLN2(91), PSMA4(132), MAPK1(148)
PSMA4	0.25315222	ERGIC2(456), ZNF706(534)
ADCK4	0.26915071	ZNF706(439), ERGIC2(621)
MAPK1	0.30703561	PLCE1(342), AKAP13(553)
HHIP	0.33377271	MAPK1(121)
B3GAT1	0.38514051	MAPK1(131), PSMA4(576)
CHRNA5	0.4051076	CHRNA3(1), CHRNB4(2), LOC123688(20), PSMA4(77), MAPK1(370)
C9orf82	0.43009446	
C19orf54	0.4360813	C19orf54(2)
GLB1L2	0.45695207	
NUMBL	0.48564748	MAPK1(205), RAB4B(538)
GYPA	0.49043807	VPREB1(597)
PPM1F	0.5304027	MAPK1(48), PSMA4(349)
SNRPA	0.53645138	RAB4B(537)
FAH	0.56083538	MAPK1(315), PSMA4(514)
ZNF706	0.57914314	FAM13A1(581)
ADAMTS7	0.58402389	RAB4B(293), MAPK1(309), PSMA4(449)
FAM9C	0.59581294	C19orf54(206)
CHRNA3	0.60349669	CHRNB4(1), CHRNA5(2), LOC123688(25), PSMA4(81), MAPK1(391)
CHRNB4	1	CHRNA3(1), CHRNA5(2), LOC123688(39), PSMA4(116), MAPK1(576)