# this file was generated by Tagger [1.1.0 / Jun 28 2005] # # author: Paul de Bakker, debakker@broad.mit.edu # # 64 tags were picked using aggressive tagging # 144 polymorphic sites >= 0% to capture with r^2 >= 0.800 # 0 haplotypes >= 5% to capture with r^2 >= 0.800 # # Allele (ID, chr, position, strand, genotype, freq) Test (ID, chr, position, strand, genotype, freq) r^2 Tag Included Excluded # # mt709 N/A 709 + 3 0.7963 mt709 N/A 709 + 3 0.7963 1.000 1 1 0 mt750 N/A 750 + 3 0.9860 mt750 N/A 750 + 3 0.9860 1.000 1 1 0 mt930 N/A 930 + 3 0.9526 mt930 N/A 930 + 3 0.9526 1.000 1 1 0 mt1189 N/A 1189 + 4 0.9289 mt1189 N/A 1189 + 4 0.9289 1.000 1 1 0 mt1243 N/A 1243 + 4 0.9494 mt11674 N/A 11674 + 2 0.9494 1.000 0 0 0 mt1438 N/A 1438 + 3 0.9741 mt4769 N/A 4769 + 3 0.9774 0.872 0 0 0 mt1719 N/A 1719 + 3 0.9375 mt12705,mt12007,mt709 N/A 12705,12007,709 +,+,+ 4,3,3 0.0528 0.836 0 0 0 mt1811 N/A 1811 + 1 0.8696 mt3348,mt9477,mt12372 N/A 3348,9477,12372 +,+,+ 1,3,1 0.1325 0.944 0 0 0 mt1888 N/A 1888 + 3 0.8901 mt12633,mt11812 N/A 12633,11812 +,+ 2,1 0.8922 0.978 0 0 0 mt2158 N/A 2158 + 4 0.9871 mt3348,mt13879 N/A 3348,13879 +,+ 1,2 0.0129 0.838 0 0 0 mt2706 N/A 2706 + 3 0.6153 mt7028 N/A 7028 + 4 0.6175 0.982 0 0 0 mt3010 N/A 3010 + 3 0.7662 mt3010 N/A 3010 + 3 0.7662 1.000 1 1 0 mt3197 N/A 3197 + 4 0.9450 mt9477 N/A 9477 + 3 0.9472 0.959 0 0 0 mt3348 N/A 3348 + 1 0.9828 mt3348 N/A 3348 + 1 0.9828 1.000 1 1 0 mt3394 N/A 3394 + 4 0.9860 mt3394 N/A 3394 + 4 0.9860 1.000 1 1 0 mt3480 N/A 3480 + 1 0.9052 mt1189,mt9716 N/A 1189,9716 +,+ 4,4 0.9041 0.988 0 0 0 mt3505 N/A 3505 + 1 0.9483 mt11674 N/A 11674 + 2 0.9494 0.978 0 0 0 mt3720 N/A 3720 + 1 0.9871 mt12372,mt5426 N/A 12372,5426 +,+ 1,2 0.0129 1.000 0 0 0 mt3915 N/A 3915 + 3 0.9871 mt3915 N/A 3915 + 3 0.9871 1.000 1 1 0 mt3990 N/A 3990 + 2 0.9881 mt10034,mt10915 N/A 10034,10915 +,+ 2,2 0.0119 1.000 0 0 0 mt3992 N/A 3992 + 2 0.9784 mt9123,mt7028 N/A 9123,7028 +,+ 1,2 0.0216 0.900 0 0 0 mt4024 N/A 4024 + 1 0.9784 mt9123,mt7028 N/A 9123,7028 +,+ 1,2 0.0216 1.000 0 0 0 mt4216 N/A 4216 + 4 0.7802 mt11812,mt13708,mt9899 N/A 11812,13708,9899 +,+,+ 1,3,4 0.7780 0.832 0 0 0 mt4336 N/A 4336 + 4 0.9784 mt4336 N/A 4336 + 4 0.9784 1.000 1 1 0 mt4529 N/A 4529 + 1 0.9709 mt7028,mt10034 N/A 7028,10034 +,+ 4,2 0.0291 1.000 0 0 0 mt4561 N/A 4561 + 4 0.9784 mt9716,mt709 N/A 9716,709 +,+ 2,1 0.0183 0.847 0 0 0 mt4580 N/A 4580 + 3 0.9300 mt7028,mt11719,mt15218 N/A 7028,11719,15218 +,+,+ 4,3,1 0.0819 0.844 0 0 0 mt4639 N/A 4639 + 4 0.9817 mt8869 N/A 8869 + 1 0.9838 0.880 0 0 0 mt4769 N/A 4769 + 3 0.9774 mt4769 N/A 4769 + 3 0.9774 1.000 1 1 0 mt4793 N/A 4793 + 1 0.9871 mt4793 N/A 4793 + 1 0.9871 1.000 1 1 0 mt4917 N/A 4917 + 1 0.8901 mt12633,mt11812 N/A 12633,11812 +,+ 2,1 0.8922 0.978 0 0 0 mt4928 N/A 4928 + 4 0.9849 mt4928 N/A 4928 + 4 0.9849 1.000 1 1 0 mt5004 N/A 5004 + 4 0.9763 mt9123,mt7028 N/A 9123,7028 +,+ 1,2 0.0216 0.907 0 0 0 mt5046 N/A 5046 + 3 0.9483 mt12705,mt709 N/A 12705,709 +,+ 4,1 0.0517 1.000 0 0 0 mt5147 N/A 5147 + 3 0.9515 mt11812,mt930 N/A 11812,930 +,+ 3,1 0.0463 0.953 0 0 0 mt5263 N/A 5263 + 2 0.9860 mt8869 N/A 8869 + 1 0.9838 0.865 0 0 0 mt5390 N/A 5390 + 1 0.9860 mt12372,mt13020 N/A 12372,13020 +,+ 1,2 0.0129 0.922 0 0 0 mt5426 N/A 5426 + 4 0.9784 mt5426 N/A 5426 + 4 0.9784 1.000 1 1 0 mt5460 N/A 5460 + 3 0.9278 mt13879,mt11674 N/A 13879,11674 +,+ 4,2 0.9353 0.857 0 0 0 mt5465 N/A 5465 + 4 0.9849 mt5465 N/A 5465 + 4 0.9849 1.000 1 1 0 mt5495 N/A 5495 + 4 0.9720 mt5495 N/A 5495 + 4 0.9720 1.000 1 1 0 mt5656 N/A 5656 + 1 0.9784 mt5656 N/A 5656 + 1 0.9784 1.000 1 1 0 mt6045 N/A 6045 + 2 0.9871 mt12372,mt13020 N/A 12372,13020 +,+ 1,2 0.0129 1.000 0 0 0 mt6152 N/A 6152 + 4 0.9860 mt5426,mt13020 N/A 5426,13020 +,+ 2,2 0.0129 0.922 0 0 0 mt6221 N/A 6221 + 4 0.9784 mt15884,mt12705,mt14470 N/A 15884,12705,14470 +,+,+ 3,4,2 0.0194 0.898 0 0 0 mt6260 N/A 6260 + 3 0.9860 mt6260 N/A 6260 + 3 0.9860 1.000 1 1 0 mt6365 N/A 6365 + 4 0.9849 mt6365 N/A 6365 + 4 0.9849 1.000 1 1 0 mt6371 N/A 6371 + 2 0.9806 mt12705,mt709,mt14470 N/A 12705,709,14470 +,+,+ 4,3,2 0.0194 1.000 0 0 0 mt6719 N/A 6719 + 4 0.9860 mt6719 N/A 6719 + 4 0.9860 1.000 1 1 0 mt6734 N/A 6734 + 3 0.9860 mt10034,mt10915 N/A 10034,10915 +,+ 2,2 0.0119 0.844 0 0 0 mt6776 N/A 6776 + 4 0.9569 mt6776 N/A 6776 + 4 0.9569 1.000 1 1 0 mt7028 N/A 7028 + 4 0.6175 mt7028 N/A 7028 + 4 0.6175 1.000 1 1 0 mt7476 N/A 7476 + 2 0.9892 mt15257,mt13708 N/A 15257,13708 +,+ 1,1 0.0108 1.000 0 0 0 mt7768 N/A 7768 + 1 0.9731 mt14182,mt10034 N/A 14182,10034 +,+ 2,4 0.0269 1.000 0 0 0 mt7864 N/A 7864 + 2 0.9569 mt11674,mt15784 N/A 11674,15784 +,+ 4,4 0.0442 0.924 0 0 0 mt8251 N/A 8251 + 3 0.9159 mt13966,mt14182,mt12705 N/A 13966,14182,12705 +,+,+ 1,4,4 0.0862 0.946 0 0 0 mt8269 N/A 8269 + 3 0.9688 mt8269 N/A 8269 + 3 0.9688 1.000 1 1 0 mt8557 N/A 8557 + 3 0.9871 mt13879,mt8269 N/A 13879,8269 +,+ 2,1 0.0119 0.916 0 0 0 mt8616 N/A 8616 + 3 0.9860 mt15924,mt10915 N/A 15924,10915 +,+ 3,2 0.0119 0.844 0 0 0 mt8697 N/A 8697 + 3 0.8890 mt11812,mt12633 N/A 11812,12633 +,+ 1,2 0.8922 0.946 0 0 0 mt8705 N/A 8705 + 4 0.9871 mt8705 N/A 8705 + 4 0.9871 1.000 1 1 0 mt8869 N/A 8869 + 1 0.9838 mt8869 N/A 8869 + 1 0.9838 1.000 1 1 0 mt8994 N/A 8994 + 3 0.9472 mt12705,mt709 N/A 12705,709 +,+ 4,1 0.0517 0.978 0 0 0 mt9055 N/A 9055 + 3 0.9030 mt9716,mt1189 N/A 9716,1189 +,+ 4,4 0.9041 0.988 0 0 0 mt9093 N/A 9093 + 1 0.9860 mt12372,mt11377 N/A 12372,11377 +,+ 1,1 0.0129 0.922 0 0 0 mt9123 N/A 9123 + 3 0.9623 mt9123 N/A 9123 + 3 0.9623 1.000 1 1 0 mt9150 N/A 9150 + 1 0.9881 mt9150 N/A 9150 + 1 0.9881 1.000 1 1 0 mt9477 N/A 9477 + 3 0.9472 mt9477 N/A 9477 + 3 0.9472 1.000 1 1 0 mt9612 N/A 9612 + 3 0.9860 mt709,mt4928 N/A 709,4928 +,+ 1,2 0.0140 1.000 0 0 0 mt9667 N/A 9667 + 1 0.9881 mt9667 N/A 9667 + 1 0.9881 1.000 1 1 0 mt9698 N/A 9698 + 4 0.9009 mt9716,mt1189 N/A 9716,1189 +,+ 4,4 0.9041 0.964 0 0 0 mt9716 N/A 9716 + 4 0.9752 mt9716 N/A 9716 + 4 0.9752 1.000 1 1 0 mt9899 N/A 9899 + 4 0.9774 mt9899 N/A 9899 + 4 0.9774 1.000 1 1 0 mt9947 N/A 9947 + 3 0.9871 mt15924,mt10915 N/A 15924,10915 +,+ 3,2 0.0119 0.916 0 0 0 mt10034 N/A 10034 + 4 0.9698 mt10034 N/A 10034 + 4 0.9698 1.000 1 1 0 mt10044 N/A 10044 + 1 0.9849 mt15884,mt8269,mt9123 N/A 15884,8269,9123 +,+,+ 3,1,1 0.0162 0.932 0 0 0 mt10084 N/A 10084 + 4 0.9892 mt10084 N/A 10084 + 4 0.9892 1.000 1 1 0 mt10238 N/A 10238 + 4 0.9515 mt5465,mt10034 N/A 5465,10034 +,+ 4,4 0.9547 0.884 0 0 0 mt10398 N/A 10398 + 1 0.7953 mt1189,mt13708,mt10034 N/A 1189,13708,10034 +,+,+ 4,3,4 0.7759 0.855 0 0 0 mt10463 N/A 10463 + 4 0.8901 mt12633,mt11812 N/A 12633,11812 +,+ 2,1 0.8922 0.978 0 0 0 mt10550 N/A 10550 + 1 0.9170 mt1189,mt9716 N/A 1189,9716 +,+ 4,4 0.9041 0.853 0 0 0 mt10876 N/A 10876 + 1 0.9871 mt12372,mt13020 N/A 12372,13020 +,+ 1,2 0.0129 1.000 0 0 0 mt10915 N/A 10915 + 4 0.9849 mt10915 N/A 10915 + 4 0.9849 1.000 1 1 0 mt11251 N/A 11251 + 1 0.7845 mt11719,mt12705,mt12372 N/A 11719,12705,12372 +,+,+ 1,2,3 0.2295 0.910 0 0 0 mt11299 N/A 11299 + 4 0.9041 mt9716,mt1189 N/A 9716,1189 +,+ 4,4 0.9041 1.000 0 0 0 mt11377 N/A 11377 + 3 0.9795 mt11377 N/A 11377 + 3 0.9795 1.000 1 1 0 mt11467 N/A 11467 + 1 0.8028 mt12705,mt12372 N/A 12705,12372 +,+ 2,1 0.1983 0.993 0 0 0 mt11470 N/A 11470 + 1 0.9871 mt1189,mt15924 N/A 1189,15924 +,+ 2,3 0.0129 1.000 0 0 0 mt11485 N/A 11485 + 4 0.9838 mt11485 N/A 11485 + 4 0.9838 1.000 1 1 0 mt11674 N/A 11674 + 2 0.9494 mt11674 N/A 11674 + 2 0.9494 1.000 1 1 0 mt11719 N/A 11719 + 1 0.5334 mt11719 N/A 11719 + 1 0.5334 1.000 1 1 0 mt11812 N/A 11812 + 1 0.9235 mt11812 N/A 11812 + 1 0.9235 1.000 1 1 0 mt11840 N/A 11840 + 2 0.9892 mt1189,mt6260 N/A 1189,6260 +,+ 2,1 0.0108 1.000 0 0 0 mt11914 N/A 11914 + 3 0.9752 mt11914 N/A 11914 + 3 0.9752 1.000 1 1 0 mt11947 N/A 11947 + 1 0.9483 mt12705,mt709 N/A 12705,709 +,+ 4,1 0.0517 1.000 0 0 0 mt12007 N/A 12007 + 3 0.9860 mt12007 N/A 12007 + 3 0.9860 1.000 1 1 0 mt12239 N/A 12239 + 2 0.9881 mt9123,mt6719 N/A 9123,6719 +,+ 1,2 0.0108 0.908 0 0 0 mt12308 N/A 12308 + 1 0.8017 mt12705,mt12372 N/A 12705,12372 +,+ 2,1 0.1983 1.000 0 0 0 mt12372 N/A 12372 + 3 0.7996 mt12372 N/A 12372 + 3 0.7996 1.000 1 1 0 mt12414 N/A 12414 + 4 0.9828 mt12414 N/A 12414 + 4 0.9828 1.000 1 1 0 mt12501 N/A 12501 + 3 0.9655 mt12705,mt15043 N/A 12705,15043 +,+ 4,1 0.0302 0.871 0 0 0 mt12612 N/A 12612 + 1 0.8933 mt12705,mt13708,mt11719 N/A 12705,13708,11719 +,+,+ 2,1,1 0.1088 0.978 0 0 0 mt12618 N/A 12618 + 3 0.9817 mt15924,mt14470,mt5656 N/A 15924,14470,5656 +,+,+ 1,4,3 0.0194 0.943 0 0 0 mt12633 N/A 12633 + 2 0.9688 mt12633 N/A 12633 + 2 0.9688 1.000 1 1 0 mt12669 N/A 12669 + 2 0.9752 mt11674,mt5495 N/A 11674,5495 +,+ 4,2 0.0248 1.000 0 0 0 mt12705 N/A 12705 + 2 0.8944 mt12705 N/A 12705 + 2 0.8944 1.000 1 1 0 mt13020 N/A 13020 + 4 0.9838 mt13020 N/A 13020 + 4 0.9838 1.000 1 1 0 mt13105 N/A 13105 + 1 0.9892 mt13105 N/A 13105 + 1 0.9892 1.000 1 1 0 mt13368 N/A 13368 + 3 0.8912 mt12633,mt11812 N/A 12633,11812 +,+ 2,1 0.8922 0.989 0 0 0 mt13617 N/A 13617 + 4 0.9472 mt9477 N/A 9477 + 3 0.9472 1.000 0 0 0 mt13708 N/A 13708 + 3 0.8772 mt13708 N/A 13708 + 3 0.8772 1.000 1 1 0 mt13734 N/A 13734 + 4 0.9849 mt13734 N/A 13734 + 4 0.9849 1.000 1 1 0 mt13740 N/A 13740 + 4 0.9892 mt6260,mt1189 N/A 6260,1189 +,+ 1,2 0.0108 1.000 0 0 0 mt13780 N/A 13780 + 1 0.9698 mt12705,mt15043 N/A 12705,15043 +,+ 4,1 0.0302 1.000 0 0 0 mt13879 N/A 13879 + 4 0.9860 mt13879 N/A 13879 + 4 0.9860 1.000 1 1 0 mt13934 N/A 13934 + 2 0.9806 mt13934 N/A 13934 + 2 0.9806 1.000 1 1 0 mt13965 N/A 13965 + 4 0.9849 mt13965 N/A 13965 + 4 0.9849 1.000 1 1 0 mt13966 N/A 13966 + 1 0.9784 mt13966 N/A 13966 + 1 0.9784 1.000 1 1 0 mt14022 N/A 14022 + 1 0.9892 mt9123,mt6719 N/A 9123,6719 +,+ 1,2 0.0108 1.000 0 0 0 mt14167 N/A 14167 + 2 0.9041 mt1189,mt9716 N/A 1189,9716 +,+ 4,4 0.9041 1.000 0 0 0 mt14182 N/A 14182 + 4 0.9720 mt14182 N/A 14182 + 4 0.9720 1.000 1 1 0 mt14233 N/A 14233 + 1 0.9192 mt11812 N/A 11812 + 1 0.9235 0.942 0 0 0 mt14365 N/A 14365 + 2 0.9784 mt7028,mt9123 N/A 7028,9123 +,+ 2,1 0.0216 1.000 0 0 0 mt14470 N/A 14470 + 4 0.9688 mt14470 N/A 14470 + 4 0.9688 1.000 1 1 0 mt14582 N/A 14582 + 1 0.9784 mt7028,mt9123 N/A 7028,9123 +,+ 2,1 0.0216 1.000 0 0 0 mt14687 N/A 14687 + 1 0.9838 mt13965 N/A 13965 + 4 0.9849 0.932 0 0 0 mt14766 N/A 14766 + 4 0.5323 mt11719,mt11812 N/A 11719,11812 +,+ 3,1 0.4655 0.966 0 0 0 mt14793 N/A 14793 + 1 0.9709 mt14793 N/A 14793 + 1 0.9709 1.000 1 1 0 mt14798 N/A 14798 + 4 0.8211 mt14798 N/A 14798 + 4 0.8211 1.000 1 1 0 mt14905 N/A 14905 + 3 0.8912 mt11812,mt12633 N/A 11812,12633 +,+ 1,2 0.8922 0.989 0 0 0 mt15043 N/A 15043 + 3 0.9569 mt15043 N/A 15043 + 3 0.9569 1.000 1 1 0 mt15218 N/A 15218 + 1 0.9806 mt15218 N/A 15218 + 1 0.9806 1.000 1 1 0 mt15257 N/A 15257 + 3 0.9849 mt15257 N/A 15257 + 3 0.9849 1.000 1 1 0 mt15452 N/A 15452 + 2 0.7834 mt12372,mt12705,mt11719 N/A 12372,12705,11719 +,+,+ 3,2,1 0.2295 0.904 0 0 0 mt15607 N/A 15607 + 1 0.8912 mt12633,mt11812 N/A 12633,11812 +,+ 2,1 0.8922 0.989 0 0 0 mt15746 N/A 15746 + 1 0.9892 mt9123,mt6719 N/A 9123,6719 +,+ 1,2 0.0108 1.000 0 0 0 mt15758 N/A 15758 + 1 0.9849 mt15758 N/A 15758 + 1 0.9849 1.000 1 1 0 mt15784 N/A 15784 + 4 0.9881 mt15784 N/A 15784 + 4 0.9881 1.000 1 1 0 mt15833 N/A 15833 + 2 0.9817 mt15833 N/A 15833 + 2 0.9817 1.000 1 1 0 mt15884 N/A 15884 + 3 0.9418 mt15884 N/A 15884 + 3 0.9418 1.000 1 1 0 mt15904 N/A 15904 + 2 0.9300 mt11719,mt15218,mt7028 N/A 11719,15218,7028 +,+,+ 3,1,4 0.0819 0.844 0 0 0 mt15907 N/A 15907 + 1 0.9871 mt11812,mt5426 N/A 11812,5426 +,+ 1,2 0.0129 1.000 0 0 0 mt15924 N/A 15924 + 1 0.9450 mt15924 N/A 15924 + 1 0.9450 1.000 1 1 0 mt15928 N/A 15928 + 3 0.8901 mt12633,mt11812 N/A 12633,11812 +,+ 2,1 0.8922 0.978 0 0 0 # sanity check: there were 144 tests in total