Color Legends

By default, IGV uses heatmaps to display certain types of data (see Default Display). Use the Color Legends window to change the default colors for these heatmaps.

To change the default colors:

1. Click View>Color Legends to display the Color Legends window.
2. Click a heatmap legend to set its color and range.
3. For LOH and Mutation data, click a colored box to change its color.

Alternatively, set default mutation data colors by modifying the prefs.properties file.